Yi Liu YiLiu6240

Research Fellow at MRC Integrative Epidemiology Unit, University of Bristol

YiLiu6240 / .bashrc

Created February 2, 2017 12:21 — forked from henrik/.bashrc

Git branch and dirty state in Bash prompt.

	# http://henrik.nyh.se/2008/12/git-dirty-prompt
	# http://www.simplisticcomplexity.com/2008/03/13/show-your-git-branch-name-in-your-prompt/
	# username@Machine ~/dev/dir[master]$ # clean working directory
	# username@Machine ~/dev/dir[master*]$ # dirty working directory

	function parse_git_dirty {
	[[ $(git status 2> /dev/null \| tail -n1) != "nothing to commit (working directory clean)" ]] && echo "*"
	}
	function parse_git_branch {
	git branch --no-color 2> /dev/null \| sed -e '/^[^]/d' -e "s/ $.*$/[\1$(parse_git_dirty)]/"

YiLiu6240 / setup-pdf-tools-msys2.org

Created September 26, 2016 10:23 — forked from justbur/setup-pdf-tools-msys2.org

Install pdf-tools on windows with msys2

Notes for compiling and setting up pdf-tools using msys2

Get pdf-tools

git clone https://github.com/politza/pdf-tools
cd pdf-tools

YiLiu6240 / create-package-list.R

Created August 14, 2016 11:59 — forked from whatalnk/create-package-list.R

docset of R installed packages

	# Package list
	create.package.list <- function(){
	make.packages.html(temp = TRUE)
	file.copy(from = file.path(tempdir(), ".R/doc/html/packages.html"), to = file.path("doc", "html"), overwrite = TRUE, copy.date = TRUE)

	doc <- htmlTreeParse(file.path("doc", "html", "packages.html"), useInternal = TRUE)

	oldNode <- newNode <- querySelector(doc, ".toplogo")
	xmlAttrs(newNode)["src"] <- "logo.png"
	addAttributes(newNode, width = "100", height = "78")

YiLiu6240 / example.openmp.r

Created July 27, 2016 08:39 — forked from doobwa/example.openmp.r

OpenMP Rcpp example

	#!/usr/bin/r

	library(inline)
	library(rbenchmark)

	## openMPCode example from Rcpp/examples/OpenMP/ by Dirk E.

	openMPCode <- '
	// assign to C++ vector
	std::vector<double> x = Rcpp::as<std::vector< double > >(xs);

YiLiu6240 / parse-options.sh

Created April 15, 2016 11:13 — forked from cosimo/parse-options.sh

Example of how to parse options with bash/getopt

	#!/bin/bash
	#
	# Example of how to parse short/long options with 'getopt'
	#

	OPTS=`getopt -o vhns: --long verbose,dry-run,help,stack-size: -n 'parse-options' -- "$@"`

	if [ $? != 0 ] ; then echo "Failed parsing options." >&2 ; exit 1 ; fi

	echo "$OPTS"

YiLiu6240 / ST_RegexSearchMultiLine

Last active August 31, 2015 15:09 — forked from clemblanco/ST_RegexSearchMultiLine

Sublime Text 2 Regex Multiline Search

	<head>((?!</head>).\|\n)+</head>
	\\begin\{longtable\}((?!\\end\{longtable\}).\|\n)+\\end\{longtable\}

	consequat(.\|\n)+laborum

YiLiu6240 / scopes.txt

Last active August 29, 2015 14:25 — forked from iambibhas/scopes.txt

Sublime Text 2: Snippet scopes

	Here is a list of scopes to use in Sublime Text 2 snippets -

	ActionScript: source.actionscript.2
	AppleScript: source.applescript
	ASP: source.asp
	Batch FIle: source.dosbatch
	C#: source.cs
	C++: source.c++
	Clojure: source.clojure
	CoffeeScript: source.coffee