Markdown is the most common format for writing on GitHub, and is what I use for all of my own documentation. It also exports to HTML and other convenient formats for reading on mobile devices. However, sometimes you want to export it as a PDF so that you can author scientific papers and export the formats that pre-print servers want.
very useful, thanks.
One issue is that the bibtex reference in paper.md does not work.
To get the reference list, please replace the brackets in
(@pizza2000identification)
with square brackets:
[@pizza2000identification].
Thanks for the writeup. Note also that the YAML header also supports an abstract:
title: My Title
abstract: Abstract text goes here.
To add multiple authors:
author:
- "Author 1"
- "Author 2"
I would like to know how to convert the citation to the one with a number. eg. Pizza [1] is an understudied yet widely utilized implement for...
On reference:
[1] Pizza, Mariagrazia, Vincenzo Scarlato, Vega Masig- nani, Marzia Monica Giuliani, Beatrice Arico, Maur- izio Comanducci, Gary T Jennings, et al. 2000. “Iden- tification of Vaccine Candidates Against Serogroup B Meningococcus by Whole-Genome Sequencing.” Sci- ence 287 (5459). American Association for the Ad- vancement of Science: 1816–20.
It seems that the pandoc-citeproc has been deprecated. You may want to replace the --filter pandoc-citeproc option with --citeproc
I would like to know how to convert the citation to the one with a number. eg. Pizza [1] is an understudied yet widely utilized implement for... On reference: [1] Pizza, Mariagrazia, Vincenzo Scarlato, Vega Masig- nani, Marzia Monica Giuliani, Beatrice Arico, Maur- izio Comanducci, Gary T Jennings, et al. 2000. “Iden- tification of Vaccine Candidates Against Serogroup B Meningococcus by Whole-Genome Sequencing.” Sci- ence 287 (5459). American Association for the Ad- vancement of Science: 1816–20.
In case somebody found this page in search for an answer for this:
with the --csl={PATH_TO_CSL_FILE} flag. See here. You can download csl files from the Zotero style repository.
If in Debian or any Debian-based linux distro, like Ubuntu, do:
sudo apt-get install pandoc pandoc-citeproc texlive-latex-extra
See also Kieran Healy's https://kieranhealy.org/blog/archives/2014/01/23/plain-text/