Peter Sudmant psudmant

psudmant / install_openblas.sh

Created January 29, 2014 17:23 — forked from nkrumm/install_openblas.sh

	#!/bin/bash


	# Get and install openblas
	mkdir -p ~/bin/openblas
	cd ~/bin/openblas
	wget https://github.com/xianyi/OpenBLAS/archive/v0.2.9.rc1.zip
	unzip v0.2.9.rc1
	cd OpenBLAS-0.2.9.rc1/
	make

psudmant / jobscript.sh

Created November 12, 2013 00:02 — forked from hyeshik/jobscript.sh

	#!/bin/sh
	#rule: {job}
	#input: {job.input}
	#output: {job.output}
	#threads: {job.threads}
	{self.workflow.snakemakepath} --snakefile {self.workflow.snakefile} \
	--force -j{self.cores} \
	--directory {workdir} --nocolor --notemp --quiet --nolock {job.output} \
	> /dev/null && touch "{jobfinished}" \|\| touch "{jobfailed}"
	exit 0

psudmant / sgesnake.sh

Created November 12, 2013 00:02 — forked from hyeshik/sgesnake.sh

	#!/bin/sh
	#
	# Adopts and submit a snakemake cluster job script to SGE queue
	#
	# by Hyeshik Chang
	#

	JOBSCRIPT_SNAKEMAKE=$1
	JOBSCRIPT_SGE="`dirname $1`/sge`basename $1`"

psudmant / gist:7031044

Created October 17, 2013 19:46 — forked from nkrumm/gist:7031035

	# set this to your head node hostname (run hostname)
	HEAD_NODE_NAME=master


	if [ `hostname` = $HEAD_NODE_NAME ]; then
	NODES=`qconf -sel \| grep -v $HEAD_NODE_NAME`
	for NODE in $NODES; do
	SCRIPT_PATH=$(dirname `which $0`)
	qsub -l h=$NODE $SCRIPT_PATH
	done

psudmant / github_cli.bash

Created October 16, 2013 23:33 — forked from nkrumm/github_cli.bash

	Improve the log (https://coderwall.com/p/euwpig?i=3&p=1&t=git)

	git config --global alias.lg "log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --"

	Enable color in git:
	git config --global --add color.ui true

	Make git push only push the current branch
	git config --global push.default current

psudmant / gist:7016821

Created October 16, 2013 23:33 — forked from nkrumm/gist:6710127

psudmant / heap.c

Created August 1, 2013 17:17 — forked from martinkunev/heap.c

	// WARNING: Requires C99 compatible compiler

	#include <unistd.h>
	#include <stdlib.h>

	#include "heap.h"

	#define CMP(a, b) ((a) >= (b))

	static const unsigned int base_size = 4;