Save this as a test file
new
snapshotDirectory /path/to/snapshot_dir
load /path/to/sample1.bam
load /path/to/sample2.bam
genome hg19
maxPanelHeight 400
goto chr11:108138003-108138003
snapshot custom_chr11-108138003-108138003.png
goto chr9:21971111-21971111
snapshot custom_chr9-21971111-21971111.png
exit
Is there a way to size to snapshot in a landscape mode? It gives me a portrait mode image. Thanks.
@jimguo see the repo here https://github.com/stevekm/IGV-snapshot-automator but you likely want this instead https://github.com/igvteam/igv-reports
@ShwetaCh the dimensions are related to the size of the xvfb buffer that gets used, I think there are some args you can try to use to control it
Hi, how did you load multiple bed files? Thanks.