Aaron C Robinson AaronCRobinson

AaronCRobinson / Count lines in Git repo

Created September 7, 2018 20:19 — forked from mandiwise/Count lines in Git repo

A command to calculate lines of code in all tracked files in a Git repo

	// Reference: http://stackoverflow.com/questions/4822471/count-number-of-lines-in-a-git-repository

	$ git ls-files \| xargs wc -l

AaronCRobinson / keybase.md

Created August 26, 2017 18:06

Keybase public key

I hereby claim:

To claim this, I am signing this object:

AaronCRobinson / context_module

Created April 4, 2014 19:58

AaronCRobinson / meta_def.rb

Created February 26, 2014 23:46

Meta Programming example for taking two classes and including their singleton methods in a new parent class. This is a form of multiple inheritance.

	# http://whytheluckystiff.net/articles/seeingMetaclassesClearly.html
	# NOTE: originally used above meta_def method but extended for arguements
	class Object
	def meta_def name, method
	# add class variable method with arguement passthrough
	(class << self; self; end).instance_eval { define_method(name) { \|args\| method.call(args)} }
	end
	end

	require 'date'

AaronCRobinson / classify.rb

Created February 26, 2014 23:35

Saw this on SO somewhere. This is helpful for adding classify function to string type. (simular to camelize)

	class String
	def classify
	self.split('_').collect!{ \|w\| w.capitalize }.join
	end
	end

AaronCRobinson / mixins.rb

Created February 21, 2014 23:17

Example of using a module with a class for mixin-ish behavior

	#!/usr/bin/ruby
	# Example of using a module with a class for mixin-ish behavior

	module ModA
	class ClassB
	attr_accessor :var
	def initialize
	puts "Initializing ClassB"
	@var = nil
	end

AaronCRobinson / homopolymers.py

Created February 19, 2014 23:38

Quick write up of counting of homopolymers using regular expressions in python.

	import argparse, regex, csv
	from Bio import SeqIO

	def countHomopolymers(seq):
	""" Given a string sequence, return a dictionary counting its homopolymers """
	# split the string into homopolymers
	# NOTE: regex will produce empty strings, filter them
	segments = filter(None, regex.findall('[A]\|[T]\|[C]\|[G]',seq.upper()))
	mersDict = {'A':[0]7,'T':[0]7,'C':[0]7,'G':[0]7}
	for seq in segments:

AaronCRobinson / pydecorator.rb

Created February 19, 2014 23:36

Python Decorator-ish Implementation in Ruby using Refinement

	#!/usr/bin/ruby2.0
	# NOTE: only works with Ruby 2.0
	# CONTEXT: One of my favorite features to python is decorators.
	# This is the most elegant and clean solution for
	# decorator-like functionality in Ruby.
	# RELATED: originally posted as anon - https://gist.github.com/anonymous/9103635

	class A
	def initialize(msg=nil)
	@msg = msg