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AmyOlex/Ensemble-to-Entrez.R

Created September 18, 2018 15:00
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Map Ensemble gene IDs to Entrez gene IDs
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Ensemble-to-Entrez.R
## Make sure you have the development version of biomaRt installed. If not then run:
## BiocInstaller::biocLite('grimbough/biomaRt')
library(biomaRt)
mart = useEnsembl("ENSEMBL_MART_ENSEMBL")
mart=useMart(biomart="ensembl", dataset="hsapiens_gene_ensembl")
bmIDs = getBM(attributes=c('ensembl_gene_id','ensembl_transcript_id',
+ 'description',
+ 'chromosome_name',
+ 'start_position',
+ 'end_position',
+ 'strand','entrezgene'),mart = mart)
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