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This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters. Learn more about bidirectional Unicode charactersOriginal file line number Diff line number Diff line change @@ -1,4 +1,6 @@ # from https://gist.github.com/stephenturner/5700920 # http://inundata.org/2011/09/29/customizing-your-rprofile/ ## Returns names(df) in single column, numbered matrix format. .env$n <- function(df) matrix(names(df)) @@ -21,4 +23,4 @@ library(plyr) .First <- function() { # library(ggplot2) cat("\nSuccessfully loaded .Rprofile at", date(), "\n") } -
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This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters. Learn more about bidirectional Unicode charactersOriginal file line number Diff line number Diff line change @@ -0,0 +1,24 @@ # from https://gist.github.com/stephenturner/5700920 ## Returns names(df) in single column, numbered matrix format. .env$n <- function(df) matrix(names(df)) # Shorten S3 methods so s(obj) instead of summary(obj) s <- base::summary; h <- utils::head; n <- base::names; ## ht==headtail, i.e., show the first and last 10 items of an object .env$ht <- function(d) rbind(head(d,10),tail(d,10)) ## Show the first 5 rows and first 5 columns of a data frame or matrix .env$hh <- function(d) if(class(d)=="matrix"|class(d)=="data.frame") d[1:5,1:5 library(ggplot2) library(plyr) ## .First() run at the start of every R session. ## Use to load commonly used packages? .First <- function() { # library(ggplot2) cat("\nSuccessfully loaded .Rprofile at", date(), "\n") } This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. 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Learn more about bidirectional Unicode charactersOriginal file line number Diff line number Diff line change @@ -0,0 +1,122 @@ # ~/.bashrc: executed by bash(1) for non-login shells. # see /usr/share/doc/bash/examples/startup-files (in the package bash-doc) # for examples # If not running interactively, don't do anything case $- in *i*) ;; *) return;; esac # don't put duplicate lines or lines starting with space in the history. # See bash(1) for more options HISTCONTROL=ignoreboth # append to the history file, don't overwrite it shopt -s histappend # for setting history length see HISTSIZE and HISTFILESIZE in bash(1) HISTSIZE=1000 HISTFILESIZE=2000 # check the window size after each command and, if necessary, # update the values of LINES and COLUMNS. shopt -s checkwinsize # If set, the pattern "**" used in a pathname expansion context will # match all files and zero or more directories and subdirectories. #shopt -s globstar # make less more friendly for non-text input files, see lesspipe(1) [ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)" # set variable identifying the chroot you work in (used in the prompt below) if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then debian_chroot=$(cat /etc/debian_chroot) fi # set a fancy prompt (non-color, unless we know we "want" color) case "$TERM" in xterm-color) color_prompt=yes;; esac # uncomment for a colored prompt, if the terminal has the capability; turned # off by default to not distract the user: the focus in a terminal window # should be on the output of commands, not on the prompt #force_color_prompt=yes if [ -n "$force_color_prompt" ]; then if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then # We have color support; assume it's compliant with Ecma-48 # (ISO/IEC-6429). (Lack of such support is extremely rare, and such # a case would tend to support setf rather than setaf.) color_prompt=yes else color_prompt= fi fi if [ "$color_prompt" = yes ]; then PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ ' else PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ ' fi unset color_prompt force_color_prompt # If this is an xterm set the title to user@host:dir case "$TERM" in xterm*|rxvt*) PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1" ;; *) ;; esac # enable color support of ls and also add handy aliases if [ -x /usr/bin/dircolors ]; then test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)" alias ls='ls --color=auto' #alias dir='dir --color=auto' #alias vdir='vdir --color=auto' alias grep='grep --color=auto' alias fgrep='fgrep --color=auto' alias egrep='egrep --color=auto' fi # Add an "alert" alias for long running commands. Use like so: # sleep 10; alert alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"' # Alias definitions. # You may want to put all your additions into a separate file like # ~/.bash_aliases, instead of adding them here directly. # See /usr/share/doc/bash-doc/examples in the bash-doc package. if [ -f ~/.bash_aliases ]; then . ~/Dropbox/.bash_aliases fi # enable programmable completion features (you don't need to enable # this, if it's already enabled in /etc/bash.bashrc and /etc/profile # sources /etc/bash.bashrc). if ! shopt -oq posix; then if [ -f /usr/share/bash-completion/bash_completion ]; then . /usr/share/bash-completion/bash_completion elif [ -f /etc/bash_completion ]; then . /etc/bash_completion fi fi ########################################################### # ams custom export PATH=$PATH:"~/opt/todo.txt-cli-2.9/" alias t="todo.sh -d ~/opt/todo.txt-cli-2.9/todo.cfg" export TODOTXT_DEFAULT_ACTION=ls # added by Anaconda 1.6.1 installer export PATH="/opt/anaconda/bin:$PATH" export EDITOR='emacsclient' This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. 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Learn more about bidirectional Unicode charactersOriginal file line number Diff line number Diff line change @@ -0,0 +1,166 @@ (setq user-full-name "Aaron Saunders" user-mail-address "[email protected]") ;; Start page (server-start) ;; PARAMETERS ;; set $PATH variable in emacs to match .bashrc ;; http://samrelton.wordpress.com/2013/09/26/emacs-and-anaconda-python/ (defun set-exec-path-from-shell-PATH () (interactive) (let ((path-from-shell (replace-regexp-in-string "^.*\n.*shell\n" "" (shell-command-to-string "$SHELL --login -i -c 'echo $PATH'")))) (setenv "PATH" path-from-shell) (setq exec-path (split-string path-from-shell path-separator)))) (set-exec-path-from-shell-PATH) (setq inhibit-startup-message t inhibit-startup-echo-area-message t) ;; disable that minize window thing (global-unset-key "\C-x\C-z") ;; require final new line (setq require-final-newline t) ;; display time (setq display-time-24hr-format t) (display-time) ;; global indent new line (define-key global-map (kbd "RET") 'newline-and-indent) (custom-set-variables ;; custom-set-variables was added by Custom. ;; If you edit it by hand, you could mess it up, so be careful. ;; Your init file should contain only one such instance. ;; If there is more than one, they won't work right. '(browse-url-browser-function (quote browse-url-generic)) '(browse-url-generic-program "google-chrome") '(display-time-mode t) '(org-agenda-files (quote ("~/Dropbox/todo/todo.org" "~/Dropbox/todo/core-paper.org" "~/Dropbox/todo/experiments.org"))) '(org-file-apps (quote ((auto-mode . emacs) ("\\.mm\\'" . default) ("\\.x?html?\\'" . default) ("\\.pdf\\'" . default) (directory . default) ("\\.ods\\'" . default) ("\\.csv\\'" . default) ("\\.tab\\'" . "gnumeric %s") ("\\.tsv\\'" . "gnumeric %s")))) '(show-paren-mode t) '(tool-bar-mode nil)) (custom-set-faces ;; custom-set-faces was added by Custom. ;; If you edit it by hand, you could mess it up, so be careful. ;; Your init file should contain only one such instance. ;; If there is more than one, they won't work right. '(default ((t (:inherit nil :stipple nil :background "#141414" :foreground "#F8F8F8" :inverse-video nil :box nil :strike-through nil :overline nil :underline nil :slant normal :weight normal :height 98 :width normal :foundry "unknown" :family "DejaVu Sans Mono"))))) ;; SHORTCUTS & key Mappings ;; y & n for yes and no (fset 'yes-or-no-p 'y-or-n-p) (tool-bar-mode -1) (defun insert-date () (interactive) (insert (format-time-string "%Y-%m-%d"))) (defun insert-timestamp () (interactive) (insert (format-time-string "%Y-%m-%d %H:%M"))) (global-set-key (kbd "C-c d") 'insert-date) (global-set-key (kbd "C-c t") 'insert-timestamp) ;; goto-line meta g (global-set-key "\M-g" 'goto-line) ;; disable ctrl Z (global-unset-key "\^z") (setq tetris-score-file "~/.emacs.d/tetris-scores") ;; MODES ;; set load path (add-to-list 'load-path "~/.emacs.d/") ;; Package management (require 'package) ;; Any add to list for package-archives (to add marmalade or melpa) goes here (add-to-list 'package-archives '("marmalade" . "http://marmalade-repo.org/packages/")) (add-to-list 'package-archives '("melpa" . "http://melpa.milkbox.net/packages/") t) (when (< emacs-major-version 24) (add-to-list 'package-archives '("gnu" . "http://elpa.gnu.org/packages/"))) (package-initialize) (require 'better-defaults) ;; org mode http://orgmode.org/ (add-to-list 'load-path "~/.emacs.d/org-8.1.1/lisp") (add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode)) (global-set-key "\C-cl" 'org-store-link) (global-set-key "\C-cc" 'org-capture) (global-set-key "\C-ca" 'org-agenda) (global-set-key "\C-cb" 'org-iswitchb) (require 'org-journal) (setq org-journal-dir "/home/ams/Dropbox/docs/work-journal") ;; Markdown mode ;; http://jblevins.org/projects/maRkdown-Mode/ (autoload 'markdown-mode "markdown-mode" "Major mode for editing Markdown files" t) (add-to-list 'auto-mode-alist '("\\.text\\'" . markdown-mode)) (add-to-list 'auto-mode-alist '("\\.markdown\\'" . markdown-mode)) (add-to-list 'auto-mode-alist '("\\.md\\'" . markdown-mode)) ;; Color Theme Mode (require 'color-theme) (color-theme-initialize) (add-to-list 'load-path "~/.emacs.d/emacs-color-theme-solarized-master") (require 'color-theme-solarized) ;(load-file "~/.emacs.d/color-theme-subdued.el") ;; ########## ;; PYTHON ;; python-mode (add-to-list 'auto-mode-alist '("\\.py\\'" . python-mode)) (add-to-list 'interpreter-mode-alist '("ipython" . python-mode)) (setq py-install-directory "~/.emacs.d/python-mode.el-6.1.2") (add-to-list 'load-path py-install-directory) (load "~/.emacs.d/python-mode.el-6.1.2/python-mode.el") ;; Make IPython the default shell ;;(require 'ipython) (defvar py-mode-map python-mode-map) (setq python-shell-interpreter "ipython" python-shell-interpreter-args "" python-shell-prompt-regexp "In \\[[0-9]+\\]: " python-shell-prompt-output-regexp "Out\\[[0-9]+\\]: " python-shell-completion-setup-code "from IPython.core.completerlib import module_completion" python-shell-completion-module-string-code "';'.join(module_completion('''%s'''))\n" python-shell-completion-string-code "';'.join(get_ipython().Completer.all_completions('''%s'''))\n") ;; IPython command line args ;; use –colors=LightBG if you have a white background ;; –pylab automatically imports all pylab functions (add-hook 'python-mode-hook (lambda () (setq py-python-command-args (quote ("–colors=Linux" "-i" "–pylab"))))) ;; Custom Keybinds (add-hook 'python-mode-hook (lambda () (local-set-key (kbd "C-c p") 'pylint) (local-set-key (kbd "C-c o") 'pep8) (local-set-key (kbd "C-c i") 'ipython) )) ; use the wx backend, for both mayavi and matplotlib (setq py-python-command-args '("--gui=wx" "--pylab=wx" "-colors" "Linux")) (setq py-force-py-shell-name-p t) ; switch to the interpreter after executing code (setq py-shell-switch-buffers-on-execute-p t) (setq py-switch-buffers-on-execute-p t) ; don't split windows (setq py-split-windows-on-execute-p t) ; try to automagically figure out indentation (setq py-smart-indentation t) (put 'dired-find-alternate-file 'disabled nil)