Alexandre Carisey alexcarisey

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Working somewhere dark

CMB/CPNDR Microscopy core director Cell & Molecular Biology Department St. Jude Children's Research Hospital

stenuto / timelapse.sh

Created June 18, 2024 20:56

Timelapse script

	#!/bin/bash

	# Check if interval argument is provided
	if [ -z "$1" ]; then
	echo "Usage: $0 -int <interval_in_seconds>"
	exit 1
	fi

	# Extract the interval value
	interval=$2

ekatrukha / 3D_tilt_stack_v1.ijm

Created February 7, 2019 18:03

ImageJ macro making a tilted movie out of Z-stack

	//ImageJ macro making a tilted movie out of stack
	//uses shear transform + rotation
	//Eugene Katrukha katpyxa at gmail.com
	requires("1.48h");

	sTitle=getTitle();
	sMovieTitle=sTitle+"_tilt_movie";
	setBatchMode(true);

	//Dialog

aaristov / zoom_movie_ImageJ_v2a.ijm

Last active October 30, 2023 04:26 — forked from ekatrukha/zoom_movie_ImageJ_v2.ijm

Improved ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI) now with logarithmic approach and dynamic scalebar

	//ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI)
	//v2 Eugene Katrukha katpyxa at gmail.com
	//v2a Andrey Aristov: aaristov at pasteur.fr
	requires("1.48h");

	//check if there is rectangular selection
	if(selectionType() ==0)
	{
	sTitle=getTitle();
	sMovieTitle=sTitle+"_zoom_movie";

naupaka / gg_jitterbox.R

Last active September 19, 2019 14:28

	# function to do a dodged half-boxplot and jittered points next to each other
	#
	# data_in should be a data frame
	# factor_col should be a bare column name (not a string)
	# although it will work if that column is factor or a character type
	# numeric_col is the y axis continuous variable
	# offset is the width of the boxplots and jittered point cloud
	#
	# the basic approach is to draw a boxplot without the tails
	# (e.g. only the interquartile range) and then use segments to add the

ekatrukha / zoom_movie_ImageJ_v2.ijm

Last active July 13, 2022 16:19

ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI)

	//ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI)
	//Eugene Katrukha katpyxa at gmail.com
	requires("1.48h");

	//check if there is rectangular selection
	if(selectionType() ==0)
	{
	sTitle=getTitle();
	sMovieTitle=sTitle+"_zoom_movie";
	setBatchMode(true);

mcnees / graph paper.tex

Last active February 16, 2024 08:34

Make your own quadrille, graph, hex, etc paper! Uses the pgf/TikZ package for LaTeX, which should be part of any modern TeX installation.

	%%-----------------------------------------------------------------------
	%% Make your own quadrille, graph, hex, etc paper!
	%% Uses the pgf/TikZ package for LaTeX, which should be part of
	%% any modern TeX installation.
	%% Email: [email protected]
	%% Twitter: @mcnees
	%%-----------------------------------------------------------------------

	\documentclass[11pt]{article}