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| #' Install/update necessary packages from CRAN, Bioconductor, GitHub, or local sources | |
| #' | |
| #' @param file a file with packages; overrides packages parameter | |
| #' @param packages a vector of strings with names of packages from CRAN, Bioconductor, GitHub | |
| #' @param failFast whether to immediately stop with an error upon first package installation failure | |
| #' @param updatePackages whether to update existing packages (Default: FALSE) | |
| #' @param dryRun whether to test for missing packages (Default: FALSE) | |
| #' | |
| #' @example | |
| #' \dontrun { |