I hereby claim:
- I am federicomarini on github.
- I am federicomarini (https://keybase.io/federicomarini) on keybase.
- I have a public key ASD6JAfpjhUeBpXdKkLJc5N39D7GI7SJ8Dx8VZZMgvwLDAo
To claim this, I am signing this object:
Federico Marini federicomarini
federicomarini
/ iSEE_plug.R
Last active
April 20, 2023 09:54
A function to wrap up the DESeq2 inputs&outputs, and plug that as SingleCellExperiment into iSEE
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| library(DESeq2) | |
| wrapup_for_iSEE <- function(dds, res) { | |
| # dds to vst | |
| vst <- vst(dds) | |
| # initialize the container | |
| se <- SummarizedExperiment( | |
| assays = List( | |
| counts = counts(dds), |