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Last active December 24, 2018 19:38
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  1. juanesarango revised this gist Dec 24, 2018. No changes.
  2. juanesarango created this gist Dec 24, 2018.
    23 changes: 23 additions & 0 deletions README.md
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    Having a bedfile like:

    `initial.bed`
    ```
    chr8 41510743 41513272 uc003xoi.3_exon_0_0_chr8_41510744_r 0 -
    chr8 41518947 41519082 uc003xoi.3_exon_1_0_chr8_41518948_r 0 -
    chr8 41519393 41519459 uc003xoi.3_exon_2_0_chr8_41519394_r 0 -
    chr8 41521176 41521260 uc003xoi.3_exon_3_0_chr8_41521177_r 0 -
    ```

    I want to get it like:

    `expected.bed`
    ```
    8 41510743 41513272 uc003xoi.3_exon_0_0_chr8_41510744_r 0 -
    8 41518947 41519082 uc003xoi.3_exon_1_0_chr8_41518948_r 0 -
    8 41519393 41519459 uc003xoi.3_exon_2_0_chr8_41519394_r 0 -
    8 41521176 41521260 uc003xoi.3_exon_3_0_chr8_41521177_r 0 -
    ```

    Run:
    `sed 's/^chr//g' initial.bed > expected.bed`