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julesjacobsen/phenogrid.json

Last active March 9, 2016 14:52
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Example of json required for loading into the phenogrid with multiple groups
Raw
phenogrid.json
{
"title": "Diseases, Mouse and Fish models compared to Pfeiffer Syndrome (OMIM:101600)",
"xAxis": [
{
"groupId": "OMIM",
"groupName": "Diseases",
"entities": [
{
"id": "OMIM:602849",
"label": "Muenke syndrome",
"phenotypes": [
{
"id": "HP:0009466",
"term": null
},
{
"id": "HP:0005819",
"term": null
},
{
"id": "HP:0001831",
"term": null
},
{
"id": "HP:0005048",
"term": null
},
{
"id": "HP:0001357",
"term": null
},
{
"id": "HP:0001249",
"term": null
},
{
"id": "HP:0001241",
"term": null
},
{
"id": "HP:0001263",
"term": null
},
{
"id": "HP:0001156",
"term": null
},
{
"id": "HP:0010579",
"term": null
},
{
"id": "HP:0010230",
"term": null
},
{
"id": "HP:0010055",
"term": null
},
{
"id": "HP:0008368",
"term": null
},
{
"id": "HP:0004440",
"term": null
},
{
"id": "HP:0000508",
"term": null
},
{
"id": "HP:0000520",
"term": null
},
{
"id": "HP:0000494",
"term": null
},
{
"id": "HP:0000407",
"term": null
},
{
"id": "HP:000031",
"term": null
},
{
"id": "HP:0000294",
"term": null
},
{
"id": "HP:0000248",
"term": null
},
{
"id": "HP:0000256",
"term": null
},
{
"id": "HP:0000272",
"term": null
},
{
"id": "HP:0000218",
"term": null
},
{
"id": "HP:0000238",
"term": null
},
{
"id": "HP:0000174",
"term": null
},
{
"id": "HP:0003795",
"term": null
},
{
"id": "HP:0030084",
"term": null
},
{
"id": "HP:0011800",
"term": null
},
{
"id": "HP:0002516",
"term": null
},
{
"id": "HP:0006193",
"term": null
},
{
"id": "HP:0100543",
"term": null
}
],
"score": {
"metric": "Monarch compare score",
"score": 73,
"rank": 0
},
"info": [
{
"id": "Disease: ",
"value": "Muenke syndrome",
"href": "http://beta.monarchinitiative.org/disease/OMIM_602849"
},
{
"id": "Source: ",
"value": "OMIM",
"href": null
}
]
},
{
"id": "OMIM:101200",
"label": "Apert Syndrome",
"phenotypes": [
{
"id": "HP:0009466",
"term": null
},
{
"id": "HP:0005819",
"term": null
},
{
"id": "HP:0001831",
"term": null
},
{
"id": "HP:0005048",
"term": null
},
{
"id": "HP:0001357",
"term": null
},
{
"id": "HP:0001249",
"term": null
},
{
"id": "HP:0001241",
"term": null
},
{
"id": "HP:0001263",
"term": null
},
{
"id": "HP:0001156",
"term": null
},
{
"id": "HP:0010579",
"term": null
},
{
"id": "HP:0010230",
"term": null
},
{
"id": "HP:0010055",
"term": null
},
{
"id": "HP:0008368",
"term": null
},
{
"id": "HP:0004440",
"term": null
},
{
"id": "HP:0000508",
"term": null
},
{
"id": "HP:0000520",
"term": null
},
{
"id": "HP:0000494",
"term": null
},
{
"id": "HP:0000407",
"term": null
},
{
"id": "HP:000031",
"term": null
},
{
"id": "HP:0000294",
"term": null
},
{
"id": "HP:0000248",
"term": null
},
{
"id": "HP:0000256",
"term": null
},
{
"id": "HP:0000272",
"term": null
},
{
"id": "HP:0000218",
"term": null
},
{
"id": "HP:0000238",
"term": null
},
{
"id": "HP:0000174",
"term": null
},
{
"id": "HP:0003795",
"term": null
},
{
"id": "HP:0030084",
"term": null
},
{
"id": "HP:0011800",
"term": null
},
{
"id": "HP:0002516",
"term": null
},
{
"id": "HP:0006193",
"term": null
},
{
"id": "HP:0100543",
"term": null
}
],
"score": {
"metric": "Monarch compare score",
"score": 73,
"rank": 0
},
"info": [
{
"id": "Disease: ",
"value": "Apert syndrome",
"href": "http://beta.monarchinitiative.org/disease/OMIM_101200"
},
{
"id": "Source: ",
"value": "OMIM",
"href": null
}
]
}
]
},
{
"groupId": "IMPC",
"groupName": "Mus musculus models",
"entities": [
{
"id": "11042",
"label": "Satb2<tm1Rug>/Satb2<tm1Rug>",
"phenotypes": [
{
"id": "MP:0000088",
"term": null
},
{
"id": "MP:0000097",
"term": null
},
{
"id": "MP:0000102",
"term": null
},
{
"id": "MP:0000107",
"term": null
},
{
"id": "MP:0000130",
"term": null
},
{
"id": "MP:0000438",
"term": null
},
{
"id": "MP:0000455",
"term": null
},
{
"id": "MP:0000458",
"term": null
},
{
"id": "MP:0000556",
"term": null
},
{
"id": "MP:0002260",
"term": null
},
{
"id": "MP:0002639",
"term": null
},
{
"id": "MP:0002820",
"term": null
},
{
"id": "MP:0002896",
"term": null
},
{
"id": "MP:0003056",
"term": null
},
{
"id": "MP:0003755",
"term": null
},
{
"id": "MP:0003795",
"term": null
},
{
"id": "MP:0004791",
"term": null
},
{
"id": "MP:0005006",
"term": null
},
{
"id": "MP:0005170",
"term": null
},
{
"id": "MP:0005272",
"term": null
},
{
"id": "MP:0006337",
"term": null
},
{
"id": "MP:0008271",
"term": null
},
{
"id": "MP:0009888",
"term": null
},
{
"id": "MP:0009890",
"term": null
},
{
"id": "MP:0009907",
"term": null
},
{
"id": "MP:0009914",
"term": null
},
{
"id": "MP:0009917",
"term": null
},
{
"id": "MP:0011089",
"term": null
}
],
"score": {
"metric": "Phenodigm score",
"score": 68.72,
"rank": 0
},
"info": [
{
"id": "Source: ",
"value": "MGI",
"href": null
},
{
"id": "Genotype: ",
"value": "<a href=\"http://informatics.jax.org/accession/MGI:3692768\">Satb2<sup>tm1Rug</sup></a>/<a href=\"http://informatics.jax.org/accession/MGI:3692768\">Satb2<sup>tm1Rug</sup></a>",
"href": null
},
{
"id": "Background: ",
"value": "Not Specified",
"href": null
},
{
"id": "Gene: ",
"value": "MGI:2679336",
"href": "/data/genes/MGI:2679336"
},
{
"id": "Phenodigm score: ",
"value": "68.72",
"href": null
},
{
"id": "Observed phenotypes: ",
"value": "",
"href": null
},
{
"id": "",
"value": "short mandible",
"href": "/data/phenotypes/MP:0000088"
},
{
"id": "",
"value": "short maxilla",
"href": "/data/phenotypes/MP:0000097"
},
{
"id": "",
"value": "abnormal nasal bone morphology",
"href": "/data/phenotypes/MP:0000102"
},
{
"id": "",
"value": "abnormal frontal bone morphology",
"href": "/data/phenotypes/MP:0000107"
},
{
"id": "",
"value": "abnormal trabecular bone morphology",
"href": "/data/phenotypes/MP:0000130"
},
{
"id": "",
"value": "abnormal cranium morphology",
"href": "/data/phenotypes/MP:0000438"
},
{
"id": "",
"value": "abnormal maxilla morphology",
"href": "/data/phenotypes/MP:0000455"
},
{
"id": "",
"value": "abnormal mandible morphology",
"href": "/data/phenotypes/MP:0000458"
},
{
"id": "",
"value": "abnormal hindlimb morphology",
"href": "/data/phenotypes/MP:0000556"
},
{
"id": "",
"value": "abnormal thyroid cartilage morphology",
"href": "/data/phenotypes/MP:0002260"
},
{
"id": "",
"value": "micrognathia",
"href": "/data/phenotypes/MP:0002639"
},
{
"id": "",
"value": "abnormal premaxilla morphology",
"href": "/data/phenotypes/MP:0002820"
},
{
"id": "",
"value": "abnormal bone mineralization",
"href": "/data/phenotypes/MP:0002896"
},
{
"id": "",
"value": "abnormal hyoid bone morphology",
"href": "/data/phenotypes/MP:0003056"
},
{
"id": "",
"value": "abnormal palate morphology",
"href": "/data/phenotypes/MP:0003755"
},
{
"id": "",
"value": "abnormal bone structure",
"href": "/data/phenotypes/MP:0003795"
},
{
"id": "",
"value": "absent lower incisors",
"href": "/data/phenotypes/MP:0004791"
},
{
"id": "",
"value": "abnormal osteoblast physiology",
"href": "/data/phenotypes/MP:0005006"
},
{
"id": "",
"value": "cleft upper lip",
"href": "/data/phenotypes/MP:0005170"
},
{
"id": "",
"value": "abnormal temporal bone morphology",
"href": "/data/phenotypes/MP:0005272"
},
{
"id": "",
"value": "abnormal first pharyngeal arch morphology",
"href": "/data/phenotypes/MP:0006337"
},
{
"id": "",
"value": "abnormal bone ossification",
"href": "/data/phenotypes/MP:0008271"
},
{
"id": "",
"value": "palatal shelves fail to meet at midline",
"href": "/data/phenotypes/MP:0009888"
},
{
"id": "",
"value": "cleft secondary palate",
"href": "/data/phenotypes/MP:0009890"
},
{
"id": "",
"value": "decreased tongue size",
"href": "/data/phenotypes/MP:0009907"
},
{
"id": "",
"value": "abnormal hyoid bone lesser horn morphology",
"href": "/data/phenotypes/MP:0009914"
},
{
"id": "",
"value": "abnormal hyoid bone body morphology",
"href": "/data/phenotypes/MP:0009917"
},
{
"id": "",
"value": "complete perinatal lethality",
"href": "/data/phenotypes/MP:0011089"
}
]
},
{
"id": "10977",
"label": "Satb2<tm1(cre)Vit>/Satb2<tm1(cre)Vit>",
"phenotypes": [
{
"id": "MP:0000111",
"term": null
},
{
"id": "MP:0000125",
"term": null
},
{
"id": "MP:0000433",
"term": null
},
{
"id": "MP:0000454",
"term": null
},
{
"id": "MP:0000547",
"term": null
},
{
"id": "MP:0002081",
"term": null
},
{
"id": "MP:0002639",
"term": null
},
{
"id": "MP:0002689",
"term": null
},
{
"id": "MP:0003056",
"term": null
},
{
"id": "MP:0004726",
"term": null
},
{
"id": "MP:0004871",
"term": null
},
{
"id": "MP:0009524",
"term": null
},
{
"id": "MP:0009907",
"term": null
}
],
"score": {
"metric": "Phenodigm score",
"score": 59.07,
"rank": 1
},
"info": [
{
"id": "Source: ",
"value": "MGI",
"href": null
},
{
"id": "Genotype: ",
"value": "<a href=\"http://informatics.jax.org/accession/MGI:3695425\">Satb2<sup>tm1(cre)Vit</sup></a>/<a href=\"http://informatics.jax.org/accession/MGI:3695425\">Satb2<sup>tm1(cre)Vit</sup></a>",
"href": null
},
{
"id": "Background: ",
"value": "involves: C57BL/6",
"href": null
},
{
"id": "Gene: ",
"value": "MGI:2679336",
"href": "/data/genes/MGI:2679336"
},
{
"id": "Phenodigm score: ",
"value": "59.07",
"href": null
},
{
"id": "Observed phenotypes: ",
"value": "",
"href": null
},
{
"id": "",
"value": "cleft palate",
"href": "/data/phenotypes/MP:0000111"
},
{
"id": "",
"value": "absent incisors",
"href": "/data/phenotypes/MP:0000125"
},
{
"id": "",
"value": "microcephaly",
"href": "/data/phenotypes/MP:0000433"
},
{
"id": "",
"value": "abnormal jaw morphology",
"href": "/data/phenotypes/MP:0000454"
},
{
"id": "",
"value": "short limbs",
"href": "/data/phenotypes/MP:0000547"
},
{
"id": "",
"value": "perinatal lethality",
"href": "/data/phenotypes/MP:0002081"
},
{
"id": "",
"value": "micrognathia",
"href": "/data/phenotypes/MP:0002639"
},
{
"id": "",
"value": "abnormal molar morphology",
"href": "/data/phenotypes/MP:0002689"
},
{
"id": "",
"value": "abnormal hyoid bone morphology",
"href": "/data/phenotypes/MP:0003056"
},
{
"id": "",
"value": "abnormal nasal capsule morphology",
"href": "/data/phenotypes/MP:0004726"
},
{
"id": "",
"value": "premaxilla hypoplasia",
"href": "/data/phenotypes/MP:0004871"
},
{
"id": "",
"value": "absent submandibular gland",
"href": "/data/phenotypes/MP:0009524"
},
{
"id": "",
"value": "decreased tongue size",
"href": "/data/phenotypes/MP:0009907"
}
]
},
{
"id": "10978",
"label": "Satb2<tm1(cre)Vit>/Satb2<+>",
"phenotypes": [
{
"id": "MP:0000111",
"term": null
},
{
"id": "MP:0000433",
"term": null
},
{
"id": "MP:0000445",
"term": null
},
{
"id": "MP:0000454",
"term": null
},
{
"id": "MP:0004726",
"term": null
},
{
"id": "MP:0004871",
"term": null
},
{
"id": "MP:0005358",
"term": null
},
{
"id": "MP:0009880",
"term": null
},
{
"id": "MP:0011110",
"term": null
}
],
"score": {
"metric": "Phenodigm score",
"score": 56.13,
"rank": 2
},
"info": [
{
"id": "Source: ",
"value": "MGI",
"href": null
},
{
"id": "Genotype: ",
"value": "<a href=\"http://informatics.jax.org/accession/MGI:3695425\">Satb2<sup>tm1(cre)Vit</sup></a>/<a href=\"http://informatics.jax.org/accession/MGI:3695425\">Satb2<sup>+</sup></a>",
"href": null
},
{
"id": "Background: ",
"value": "involves: C57BL/6",
"href": null
},
{
"id": "Gene: ",
"value": "MGI:2679336",
"href": "/data/genes/MGI:2679336"
},
{
"id": "Phenodigm score: ",
"value": "56.13",
"href": null
},
{
"id": "Observed phenotypes: ",
"value": "",
"href": null
},
{
"id": "",
"value": "cleft palate",
"href": "/data/phenotypes/MP:0000111"
},
{
"id": "",
"value": "microcephaly",
"href": "/data/phenotypes/MP:0000433"
},
{
"id": "",
"value": "short snout",
"href": "/data/phenotypes/MP:0000445"
},
{
"id": "",
"value": "abnormal jaw morphology",
"href": "/data/phenotypes/MP:0000454"
},
{
"id": "",
"value": "abnormal nasal capsule morphology",
"href": "/data/phenotypes/MP:0004726"
},
{
"id": "",
"value": "premaxilla hypoplasia",
"href": "/data/phenotypes/MP:0004871"
},
{
"id": "",
"value": "abnormal incisor morphology",
"href": "/data/phenotypes/MP:0005358"
},
{
"id": "",
"value": "microstomia",
"href": "/data/phenotypes/MP:0009880"
},
{
"id": "",
"value": "partial preweaning lethality",
"href": "/data/phenotypes/MP:0011110"
}
]
}
]
},
{
"groupId": "ZFIN",
"groupName": "Danio rerio models",
"entities": [
{
"id": "ZFIN:ZDB-GENE-040901-1",
"label": "furina",
"phenotypes": [
{
"id": "ZP:0005834",
"term": null
},
{
"id": "ZP:0005832",
"term": null
},
{
"id": "ZP:0005334",
"term": null
},
{
"id": "ZP:0005097",
"term": null
},
{
"id": "ZP:0005098",
"term": null
},
{
"id": "ZP:0005099",
"term": null
},
{
"id": "ZP:0000895",
"term": null
},
{
"id": "ZP:0000894",
"term": null
},
{
"id": "ZP:0000893",
"term": null
},
{
"id": "ZP:0000892",
"term": null
},
{
"id": "ZP:0000896",
"term": null
},
{
"id": "ZP:0000891",
"term": null
},
{
"id": "ZP:0000881",
"term": null
},
{
"id": "ZP:0000880",
"term": null
},
{
"id": "ZP:0000882",
"term": null
},
{
"id": "ZP:0000935",
"term": null
},
{
"id": "ZP:0000916",
"term": null
},
{
"id": "ZP:0000910",
"term": null
},
{
"id": "ZP:0000908",
"term": null
},
{
"id": "ZP:0000909",
"term": null
},
{
"id": "ZP:0000411",
"term": null
},
{
"id": "MP:0011110",
"term": null
},
{
"id": "ZP:0006948",
"term": null
},
{
"id": "ZP:0006953",
"term": null
},
{
"id": "ZP:0006952",
"term": null
},
{
"id": "ZP:0006950",
"term": null
},
{
"id": "ZP:0006951",
"term": null
},
{
"id": "ZP:0000057",
"term": null
},
{
"id": "ZP:0000064",
"term": null
},
{
"id": "ZP:0000095",
"term": null
},
{
"id": "ZP:0000041",
"term": null
},
{
"id": "MP:0011110",
"term": null
},
{
"id": "MP:0011110",
"term": null
},
{
"id": "ZP:0000043",
"term": null
},
{
"id": "ZP:0000212",
"term": null
},
{
"id": "ZP:0000235",
"term": null
},
{
"id": "ZP:0007030",
"term": null
},
{
"id": "ZP:0004969",
"term": null
},
{
"id": "ZP:0001464",
"term": null
},
{
"id": "ZP:0005424",
"term": null
},
{
"id": "ZP:0005423",
"term": null
},
{
"id": "ZP:0002890",
"term": null
},
{
"id": "ZP:0006382",
"term": null
},
{
"id": "ZP:0006947",
"term": null
},
{
"id": "ZP:0004819",
"term": null
},
{
"id": "ZP:0004669",
"term": null
},
{
"id": "ZP:0004670",
"term": null
},
{
"id": "ZP:0000872",
"term": null
},
{
"id": "ZP:0000924",
"term": null
},
{
"id": "ZP:0000926",
"term": null
},
{
"id": "ZP:0000920",
"term": null
},
{
"id": "ZP:0006946",
"term": null
},
{
"id": "ZP:0000911",
"term": null
},
{
"id": "ZP:0000936",
"term": null
},
{
"id": "ZP:0001969",
"term": null
},
{
"id": "ZP:0006949",
"term": null
},
{
"id": "ZP:0007760",
"term": null
},
{
"id": "ZP:0003788",
"term": null
},
{
"id": "ZP:0000776",
"term": null
},
{
"id": "ZP:0015316",
"term": null
},
{
"id": "ZP:0000107",
"term": null
},
{
"id": "ZP:0000222",
"term": null
},
{
"id": "ZP:0000454",
"term": null
},
{
"id": "ZP:0000460",
"term": null
},
{
"id": "ZP:0000458",
"term": null
},
{
"id": "ZP:0000586",
"term": null
},
{
"id": "ZP:0000473",
"term": null
},
{
"id": "ZP:0001721",
"term": null
},
{
"id": "ZP:0002202",
"term": null
},
{
"id": "ZP:0007027",
"term": null
}
],
"score": {
"metric": "Monarch score",
"score": 40,
"rank": 0
},
"info": [
{
"id": "Source: ",
"value": "ZFIN",
"href": null
},
{
"id": "Genotype: ",
"value": "<a title=\"ZFIN:ZDB-FISH-150901-28273 (go to the page for WT; furina<MO1-furina>)\" href=\"http://beta.monarchinitiative.org/genotype/ZFIN:ZDB-FISH-150901-28273\">WT; furina&lt;MO1-furina&gt;</a>",
"href": null
}
]
}
]
}
],
"yAxis": [
{
"groupId": "0",
"groupName": "Disease",
"entities": [
{
"id": "OMIM:101600",
"label": " Pfeiffer Syndrome",
"phenotypes": [
{
"id": "HP:0000006",
"term": "Autosomal dominant inheritance"
},
{
"id": "HP:0000174",
"term": "Abnormality of the palate"
},
{
"id": "HP:0000194",
"term": "Open mouth"
},
{
"id": "HP:0000218",
"term": "High palate"
},
{
"id": "HP:0000238",
"term": "Hydrocephalus"
},
{
"id": "HP:0000244",
"term": "Brachyturricephaly"
},
{
"id": "HP:0000272",
"term": "Malar flattening"
},
{
"id": "HP:0000303",
"term": "Mandibular prognathia"
},
{
"id": "HP:0000316",
"term": "Hypertelorism"
},
{
"id": "HP:0000322",
"term": "Short philtrum"
},
{
"id": "HP:0000324",
"term": "Facial asymmetry"
},
{
"id": "HP:0000327",
"term": "Hypoplasia of the maxilla"
},
{
"id": "HP:0000348",
"term": "High forehead"
},
{
"id": "HP:0000431",
"term": "Wide nasal bridge"
},
{
"id": "HP:0000452",
"term": "Choanal stenosis"
},
{
"id": "HP:0000453",
"term": "Choanal atresia"
},
{
"id": "HP:0000470",
"term": "Short neck"
},
{
"id": "HP:0000486",
"term": "Strabismus"
},
{
"id": "HP:0000494",
"term": "Downslanted palpebral fissures"
},
{
"id": "HP:0000508",
"term": "Ptosis"
},
{
"id": "HP:0000586",
"term": "Shallow orbits"
},
{
"id": "HP:0000678",
"term": "Dental crowding"
},
{
"id": "HP:0001156",
"term": "Brachydactyly syndrome"
},
{
"id": "HP:0001249",
"term": "Intellectual disability"
},
{
"id": "HP:0002308",
"term": "Arnold-Chiari malformation"
},
{
"id": "HP:0002676",
"term": "Cloverleaf skull"
},
{
"id": "HP:0002780",
"term": "Bronchomalacia"
},
{
"id": "HP:0003041",
"term": "Humeroradial synostosis"
},
{
"id": "HP:0003070",
"term": "Elbow ankylosis"
},
{
"id": "HP:0003196",
"term": "Short nose"
},
{
"id": "HP:0003272",
"term": "Abnormality of the hip bone"
},
{
"id": "HP:0003307",
"term": "Hyperlordosis"
},
{
"id": "HP:0003795",
"term": "Short middle phalanx of toe"
},
{
"id": "HP:0004209",
"term": "Clinodactyly of the 5th finger"
},
{
"id": "HP:0004322",
"term": "Short stature"
},
{
"id": "HP:0004440",
"term": "Coronal craniosynostosis"
},
{
"id": "HP:0005048",
"term": "Synostosis of carpal bones"
},
{
"id": "HP:0005280",
"term": "Depressed nasal bridge"
},
{
"id": "HP:0005347",
"term": "Cartilaginous trachea"
},
{
"id": "HP:0006101",
"term": "Finger syndactyly"
},
{
"id": "HP:0006110",
"term": "Shortening of all middle phalanges of the fingers"
},
{
"id": "HP:0009602",
"term": "Abnormality of thumb phalanx"
},
{
"id": "HP:0009773",
"term": "Symphalangism affecting the phalanges of the hand"
},
{
"id": "HP:0010055",
"term": "Broad hallux"
},
{
"id": "HP:0010669",
"term": "Hypoplasia of the zygomatic bone"
},
{
"id": "HP:0011304",
"term": "Broad thumb"
}
],
"score": null,
"info": [
{
"id": "Disease: ",
"value": "Pfeiffer syndrome",
"href": "http://beta.monarchinitiative.org/disease/OMIM_101600"
},
{
"id": "Source: ",
"value": "OMIM",
"href": null
}
]
}
]
}
]
}
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