Mikhail Dozmorov mdozmorov

Bioinformatician, interested in 3D genomics, cancer, statistics, programming, machine and deep learning

mdozmorov / autoloess.R

Created January 20, 2017 20:40 — forked from kylebgorman/autoloess.R

autoloess.R: set the "span" (smoothing) hyperparameter for a LOESS curve so as to minimize AIC_c (includes a cute demonstration)

	# autoloess.R: compute loess metaparameters automatically
	# Kyle Gorman <[email protected]>

	aicc.loess <- function(fit) {
	# compute AIC_C for a LOESS fit, from:
	#
	# Hurvich, C.M., Simonoff, J.S., and Tsai, C. L. 1998. Smoothing
	# parameter selection in nonparametric regression using an improved
	# Akaike Information Criterion. Journal of the Royal Statistical
	# Society B 60: 271–293.

mdozmorov / human-bodymap2.0-fpkms.bash

Created November 21, 2015 14:08 — forked from ericminikel/human-bodymap2.0-fpkms.bash

Bash script to calculate FPKMs from the Human BodyMap 2.0 mRNA-seq data.

	# Eric Minikel
	# CureFFI.org
	# 2013-07-04
	# Bash script to generate FPKMs from Ensembl Human Bodymap 2.0 RNA-seq data

	# Announcement of Human BodyMap 2.0 data availability: http://www.ensembl.info/blog/2011/05/24/human-bodymap-2-0-data-from-illumina/
	# BAM list: ftp://ftp.ensembl.org/pub/release-70/bam/homo_sapiens/genebuild/

	# STEP 1: DOWNLOAD THE BAMS FROM ENSEMBL

mdozmorov / tmux-cheatsheet.markdown

Last active August 29, 2015 14:28 — forked from MohamedAlaa/tmux-cheatsheet.markdown

tmux shortcuts & cheatsheet

start new:

tmux

start new with session name:

tmux new -s myname