mjsteinbaugh / program_version.py

Created May 10, 2019 13:15 — forked from kjk/program_version.py

	#!/usr/bin/env python

	# This code was written by Krzysztof Kowalczyk (http://blog.kowalczyk.info)
	# and is placed in public domain.

	def v2fhelper(v, suff, version, weight):
	parts = v.split(suff)
	if 2 != len(parts):
	return v
	version[4] = weight

mjsteinbaugh / bbedit-12.6.2-icloud-application-support-fix.sh

Created April 4, 2019 13:10

	# BBEdit 12.6.2 update doesn't locate preferences in iCloud correctly.
	# Create a symlink in `~/Library/Application Support` to resolve this.
	rm -rf "${HOME}/Library/Application Support/BBEdit"
	ln -s "${HOME}/Library/Mobile Documents/com~apple~CloudDocs/Application Support/BBEdit" "${HOME}/Library/Application Support/BBEdit"

mjsteinbaugh / git-submodules.md

Created April 1, 2019 21:47 — forked from slavafomin/git-submodules.md

Git submodules best practices

Useful commands

— Clone repository with submodules automatically:

git clone --recursive [email protected]:name/repo.git

— Initialize submodules after regular cloning:

mjsteinbaugh / git-submodule-detached-head-fix.sh

Created March 25, 2019 13:12

	# Fix detached head in a submodule

	# Here's a good explanation on how to fix detached HEAD for submodules.
	# https://stackoverflow.com/questions/18770545

	git branch
	git checkout master
	git submodule add -b <branch> <repository> [<submodule-path>]

	git branch --set-upstream-to=origin/master master

mjsteinbaugh / bcl2fastq-indrops.sh

Last active March 25, 2019 13:11

bcl2fastq --use-bases-mask y*,y*,y*,y* --mask-short-adapter-reads 0 --minimum-trimmed-read-length 0

mjsteinbaugh / rmarkdown-template-issue.txt

Created March 18, 2019 19:31

R Markdown templates don't appear in viewer

https://bookdown.org/yihui/rmarkdown/document-templates.html

mjsteinbaugh / travis-ci-callr-corrupt-error.txt

Created March 18, 2019 19:27

Travis CI failing due to corrupt callr.rdb file

	Error in get0(oNam, envir = ns) :
	lazy-load database '/home/travis/R/Library/callr/R/callr.rdb' is corrupt
	Calls: <Anonymous> ... force -> rcmd_build_tools -> :: -> getExportedValue -> get0
	In addition: Warning message:
	In get0(oNam, envir = ns) : internal error -3 in R_decompress1
	Execution halted

mjsteinbaugh / normalize-windows-file-path-from-clipboard.R

Created March 7, 2019 18:25

	# Normalize a Windows file path from the clipboard.
	#
	# Single backslash is an escape character in R.
	# Sanitize `\` to either `\\` or `/` (preferred).
	#
	# Otherwise, you'll hit this error:
	# Error: '\p' is an unrecognized escape in character
	#
	# Note that this only works in R running on Windows.
	# Linux/macOS R doesn't have the `readClipboard()` function.

mjsteinbaugh / DEPRECATED-rcpp-mojave.txt

Last active April 7, 2019 13:16

Rcpp macOS Mojave header fix

Gist has moved to https://steinbaugh.com/posts/rbenv.html

mjsteinbaugh / DEPRECATED-private-fork.md

Last active February 26, 2019 13:44 — forked from 0xjac/private_fork.md

Create a private fork of a public repository

Michael Steinbaugh mjsteinbaugh