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patidarr/modifyQualityScore.sh

Created November 29, 2016 14:22
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modifyQualityScore.sh
zcat ${sample}_R1.fastq.gz |sed -e '4~4y/KLMNOPQRSTUVWXYZ[\\]^_`abcdefghijklmnopqrstuvwxyz{|}~/""""""""""""""""""""""""""""""""""""""""""""""""""""/' |gzip >${sample}_R1.fixed.fastq.gz &
zcat ${sample}_R2.fastq.gz |sed -e '4~4y/KLMNOPQRSTUVWXYZ[\\]^_`abcdefghijklmnopqrstuvwxyz{|}~/""""""""""""""""""""""""""""""""""""""""""""""""""""/' |gzip >${sample}_R2.fixed.fastq.gz &
wait
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