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rsignell/rechunker_zarr3_env.yml

Created October 15, 2025 21:26
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  1. rsignell created this gist Oct 15, 2025.
    135 changes: 135 additions & 0 deletions rechunker_zarr3_env.yml
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    name: protocoast-notebook
    channels:
    - conda-forge
    - nodefaults
    dependencies:
    - python=3.13
    # distributed python
    - dask[complete]
    - cubed[diagnostics]
    - dask-geopandas
    - fsspec>=2023.05
    - flox
    - dask-gateway
    - python-graphviz
    - distributed
    - streamz
    - cachey
    - coiled
    - joblib
    # gis
    - gdal>=3.8
    - leafmap
    - gmt
    - pyproj
    - cartopy
    - shapely
    - rasterio
    - pyresample
    - rasterstats
    - spectral
    - scikit-image
    - ipyleaflet
    # EVA
    - pyextremes
    - bioconda::fitter
    - scikit-learn
    - tabulate
    - cmocean
    - basemap
    # build-essential
    - cmake
    - numba
    - git-lfs
    - nomkl
    - lz4
    - lxml
    # pangeo
    - xarray
    - cf_xarray
    - cftime
    - nc-time-axis
    - rioxarray
    - intake
    - intake-xarray
    - intake-erddap
    - intake-esm
    - geopandas
    - virtualizarr=2.1.1
    - zarr>=3
    - icechunk
    - python-dotenv
    - xoak
    - xmip
    - xarrayutils
    - xstac
    - xpystac
    - pystac
    - rustac
    - planetary-computer
    - xesmf
    # pangeo-dataviz
    - pyviz_comms
    - geoviews
    - hvplot
    - jupyter_bokeh
    - hvsampledata
    - datashader
    - seaborn
    - matplotlib-base
    - ipympl
    - bqplot
    - lonboard
    # backends
    - h5py>3.11
    - h5coro
    - kerchunk
    - h5netcdf
    - pynco
    - pydap
    - icepyx
    - harmony-py
    - sliderule>=3.6.0
    - pystac-client
    - itslive
    - s3fs
    - gcsfs
    - fastparquet
    - erddapy
    - copernicusmarine>=2.1.1
    # Jupyterlab
    - python-gist
    - git-lfs
    - dask-labextension
    - jupyter-server-proxy>=4.1.1
    - jupyter-vscode-proxy
    - ipywidgets
    - jupytext
    - jupyter-book
    - jupyterlab
    - code-server
    - gh-scoped-creds==4.1
    - jupyterhub-singleuser
    - jupyterlab-geojson
    - jupyterlab-favorites
    - jupyterlab-git
    - jupyter-resource-usage
    - jupyterlab-h5web>=12.0.0
    - hdf5plugin
    - conda-lock
    - pooch
    - git>=2.39
    - pqdm
    - nbgitpuller>=1.2.1
    - ocl-icd-system
    - websockify>=0.10
    - awscliv2
    # we could use more platforms but in the hub only linux-64 is relevant
    - pip
    - pip:
    - git+https://github.com/dcherian/rolodex@main
    - git+https://github.com/opendatacube/[email protected]
    - git+https://github.com/opendatacube/odc-stac
    - git+https://github.com/zcobell/rechunker@zcobell/zarr_v3
    platforms:
    - linux-64