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sarjopp / iterm2.md
Created November 8, 2022 17:03 — forked from squarism/iterm2.md
An iTerm2 Cheatsheet

Tabs and Windows

Function Shortcut
New Tab + T
Close Tab or Window + W (same as many mac apps)
Go to Tab + Number Key (ie: ⌘2 is 2nd tab)
Go to Split Pane by Direction + Option + Arrow Key
Cycle iTerm Windows + backtick (true of all mac apps and works with desktops/mission control)
@sarjopp
sarjopp / BCFtools cheat sheet
Created October 5, 2022 20:45 — forked from elowy01/BCFtools cheat sheet
BCFtools cheat sheet
*bcftools filter
*Filter variants per region (in this example, print out only variants mapped to chr1 and chr2)
qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz
*printing out info for only 2 samples:
bcftools view -s NA20818,NA20819 filename.vcf.gz
*printing stats only for variants passing the filter:
bcftools view -f PASS filename.vcf.gz