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thecochenille/gist:cdfb4053de08bd91ecc9

Forked from brantfaircloth/gist:895282
Created May 9, 2014 07:25
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Revisions

  1. Brant Faircloth revised this gist Mar 30, 2011. 1 changed file with 1 addition and 1 deletion.
    2 changes: 1 addition & 1 deletion gistfile1.md
    View file
    Original file line number Diff line number Diff line change
    @@ -48,7 +48,7 @@
    lset applyto=() nst=1 rates=gamma # F81 + gamma
    lset applyto=() nst=1 rates=invgamma # F81 + I + gamma

    # Jukes Cantor
    ## Jukes Cantor

    lset applyto=() nst=1 # JC
    prset applyto=() statefreqpr=fixed(equal)
  2. Brant Faircloth revised this gist Mar 30, 2011. 1 changed file with 5 additions and 5 deletions.
    10 changes: 5 additions & 5 deletions gistfile1.md
    View file
    Original file line number Diff line number Diff line change
    @@ -1,10 +1,10 @@
    # GTR
    ##GTR
    lset applyto=() nst=6 # GTR
    lset applyto=() nst=6 rates=propinv # GTR + I
    lset applyto=() nst=6 rates=gamma # GTR + gamma
    lset applyto=() nst=6 rates=invgamma # GTR + I + gamma

    # SYM
    ##SYM

    lset applyto=() nst=6 # SYM
    prset applyto=() statefreqpr=fixed(equal)
    @@ -19,14 +19,14 @@
    prset applyto=() statefreqpr=fixed(equal)


    # HKY
    ##HKY

    lset applyto=() nst=2 # HKY
    lset applyto=() nst=2 rates=propinv # HKY + I
    lset applyto=() nst=2 rates=gamma # HKY + gamma
    lset applyto=() nst=2 rates=invgamma # HKY + I + gamma

    # K2P
    ##K2P

    lset applyto=() nst=2 # K2P
    prset applyto=() statefreqpr=fixed(equal)
    @@ -41,7 +41,7 @@
    prset applyto=() statefreqpr=fixed(equal)


    # F81
    ##F81

    lset applyto=() nst=1 # F81
    lset applyto=() nst=1 rates=propinv # F81 + I
  3. Brant Faircloth created this gist Mar 30, 2011.
    63 changes: 63 additions & 0 deletions gistfile1.md
    View file
    Original file line number Diff line number Diff line change
    @@ -0,0 +1,63 @@
    # GTR
    lset applyto=() nst=6 # GTR
    lset applyto=() nst=6 rates=propinv # GTR + I
    lset applyto=() nst=6 rates=gamma # GTR + gamma
    lset applyto=() nst=6 rates=invgamma # GTR + I + gamma

    # SYM

    lset applyto=() nst=6 # SYM
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=6 rates=propinv # SYM + I
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=6 rates=gamma # SYM + gamma
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=6 rates=invgamma # SYM + I + gamma
    prset applyto=() statefreqpr=fixed(equal)


    # HKY

    lset applyto=() nst=2 # HKY
    lset applyto=() nst=2 rates=propinv # HKY + I
    lset applyto=() nst=2 rates=gamma # HKY + gamma
    lset applyto=() nst=2 rates=invgamma # HKY + I + gamma

    # K2P

    lset applyto=() nst=2 # K2P
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=2 rates=propinv # K2P + I
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=2 rates=gamma # K2P + gamma
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=2 rates=invgamma # K2P + I + gamma
    prset applyto=() statefreqpr=fixed(equal)


    # F81

    lset applyto=() nst=1 # F81
    lset applyto=() nst=1 rates=propinv # F81 + I
    lset applyto=() nst=1 rates=gamma # F81 + gamma
    lset applyto=() nst=1 rates=invgamma # F81 + I + gamma

    # Jukes Cantor

    lset applyto=() nst=1 # JC
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=1 rates=propinv # JC + I
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=1 rates=gamma # JC + gamma
    prset applyto=() statefreqpr=fixed(equal)

    lset applyto=() nst=1 rates=incgamma # JC + I + gamma
    prset applyto=() statefreqpr=fixed(equal)