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vogdb/472363762biophys.hoc

Last active August 18, 2019 13:59
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Revisions

  1. vogdb revised this gist Aug 18, 2019. 1 changed file with 22 additions and 22 deletions.
    44 changes: 22 additions & 22 deletions 472363762biophys.hoc
    View file
    Original file line number Diff line number Diff line change
    @@ -33,30 +33,30 @@ proc biophys() {
    ek = -107.0
    g_pas = 5.71881e-06

    insert CaDynamics
    insert CaDynamics
    gamma_CaDynamics = 0.00125108
    decay_CaDynamics = 717.917
    insert Ca_HVA
    gbar_Ca_HVA = 0.000535997
    insert Ca_LVA
    gbar_Ca_LVA = 0.00700613
    insert Ih
    gbar_Ih = 4.12226e-05
    insert Im
    gbar_Im = 0.00120212
    insert K_P
    gbar_K_P = 0.0517584
    insert K_T
    gbar_K_T = 0.000731607
    insert Kv3_1
    gbar_Kv3_1 = 0.0572648
    insert NaTs
    gbar_NaTs = 0.98229
    insert Nap
    gbar_Nap = 0.000209349
    insert SK
    gbar_SK = 0.00019222
    }
    insert Ca_HVA
    gbar_Ca_HVA = 0.000535997
    insert Ca_LVA
    gbar_Ca_LVA = 0.00700613
    insert Ih
    gbar_Ih = 4.12226e-05
    insert Im
    gbar_Im = 0.00120212
    insert K_P
    gbar_K_P = 0.0517584
    insert K_T
    gbar_K_T = 0.000731607
    insert Kv3_1
    gbar_Kv3_1 = 0.0572648
    insert NaTs
    gbar_NaTs = 0.98229
    insert Nap
    gbar_Nap = 0.000209349
    insert SK
    gbar_SK = 0.00019222
    }
    }

    endtemplate L5PCbiophys
  2. vogdb created this gist Aug 18, 2019.
    62 changes: 62 additions & 0 deletions 472363762biophys.hoc
    View file
    Original file line number Diff line number Diff line change
    @@ -0,0 +1,62 @@
    // is the name L5PCbiophys fine?
    // How should we reference the cell? $o1?
    // Should we use $o1.distribute_channels?

    begintemplate L5PCbiophys
    public biophys

    proc biophys() {
    forsec $o1.all {
    insert pas
    Ra = 138.28
    e_pas = -92.4991149902
    }

    forsec $o1.axonal {
    cm = 1.0
    g_pas = 0.000457387600765
    }

    forsec $o1.apical {
    cm = 2.12
    g_pas = 9.58618554762e-05
    }

    forsec $o1.basal {
    cm = 2.12
    g_pas = 3.23932732744e-06
    }

    forsec $o1.somatic {
    cm = 1.0
    ena = 53.0
    ek = -107.0
    g_pas = 5.71881e-06

    insert CaDynamics
    gamma_CaDynamics = 0.00125108
    decay_CaDynamics = 717.917
    insert Ca_HVA
    gbar_Ca_HVA = 0.000535997
    insert Ca_LVA
    gbar_Ca_LVA = 0.00700613
    insert Ih
    gbar_Ih = 4.12226e-05
    insert Im
    gbar_Im = 0.00120212
    insert K_P
    gbar_K_P = 0.0517584
    insert K_T
    gbar_K_T = 0.000731607
    insert Kv3_1
    gbar_Kv3_1 = 0.0572648
    insert NaTs
    gbar_NaTs = 0.98229
    insert Nap
    gbar_Nap = 0.000209349
    insert SK
    gbar_SK = 0.00019222
    }
    }

    endtemplate L5PCbiophys