yoavram · March 26, 2017 06:00 · Mar 26, 2017 · Mar 26, 2017 · Mar 26, 2017
diff --git a/Makefile b/Makefile
@@ -0,0 +1,36 @@
+main_bib=~/library.bib
+ms_bib=bibtex.bib
+citation_keys=citation_keys
+pdf=ms.pdf
+md=ms.md
+csl=evolution.csl
+
+diagram_dot = diagram.dot
+diagram_pdf = diagram.pdf
+
+list:
+	@sh -c "$(MAKE) -p no_targets__ | awk -F':' '/^[a-zA-Z0-9][^\$$#\/\\t=]*:([^=]|$$)/ {split(\$$1,A,/ /);for(i in A)print A[i]}' | grep -v '__\$$' | grep -v 'make\[1\]' | grep -v 'Makefile' | sort"
+no_targets__:
+
+$(citation_keys): $(md)
+	python get_citations.py $(md) $(citation_keys)
+
+$(ms_bib): $(citation_keys) $(main_bib)
+	python get_bibtex.py $(citation_keys) $(main_bib) $@
+
+$(pdf): $(md) $(ms_bib) $(diagram_pdf)
+	pandoc -r markdown+simple_tables+table_captions+yaml_metadata_block -s -S $< -o $@ --filter pandoc-crossref --filter pandoc-citeproc --bibliography=$(ms_bib) --csl $(csl) --latex-engine=xelatex --number-sections
+	@open $(pdf)
+
+$(diagram_pdf): $(diagram_dot)
+	dot $< -Tpdf -Kdot -o$@
+
+model_diagram: $(diagram_pdf)
+
+build: $(pdf)
+
+edit: $(md)
+	@subl $<
+
+read: $(pdf)
+	@open $(pdf)
diff --git a/get_bib.py b/get_bib.py
@@ -0,0 +1,35 @@
+from bibtexparser import load as load_bib
+from bibtexparser.bwriter import BibTexWriter
+from bibtexparser.bibdatabase import BibDatabase
+import click
+
+@click.command()
+@click.argument('keys_filename', type=click.Path(exists=True, file_okay=True, dir_okay=False, readable=True))
+@click.argument('bibtex_filename', type=click.Path(exists=True, file_okay=True, dir_okay=False, readable=True))
+@click.argument('output_filename', type=click.Path(file_okay=True, dir_okay=False, writable=True))
+@click.option('-v/-V', '--verbose/--no-verbose', default=False)
+def main(keys_filename, bibtex_filename, output_filename, verbose):
+	with open(keys_filename) as f:
+		citation_keys = (line.strip() for line in f.readlines())
+	if verbose:
+		print("Read {} keys from {}".format(len(citation_keys), citation_keys))
+
+	with open(bibtex_filename) as f:
+		main_bib = load_bib(f)
+	if verbose:
+		print("Read {} entries from {}".format(len(main_bib.entries), bibtex_filename))
+
+	out_bib = BibDatabase()
+	for key in citation_keys:
+		e = main_bib.entries_dict[key]
+		out_bib.entries.append(e)
+
+	if verbose:
+		print("Writing {} entries to {}".format(len(out_bib.entries), output_filename))
+	writer = BibTexWriter()
+	with open(output_filename, 'w') as f:
+	    f.write(writer.write(out_bib))
+
+
+if __name__ == '__main__':
+	main()%
diff --git a/get_citations.py b/get_citations.py
@@ -0,0 +1,19 @@
+import re
+
+import click
+
+@click.command()
+@click.argument('markdown_filename', type=click.Path(exists=True, file_okay=True, dir_okay=False, readable=True))
+@click.argument('keys_filename', type=click.Path(file_okay=True, dir_okay=False, writable=True))
+def main(markdown_filename, keys_filename):
+	pattern = re.compile('@(\w+\d{4})')
+	with open(markdown_filename) as f:
+		groups = (pattern.findall(line) for line in f)
+		groups = sum((g for g in groups if g), [])
+	groups = set(groups)
+	with open(keys_filename, 'wt') as f:
+		for g in groups:
+			print(g, file=f)
+
+if __name__ == '__main__':
+	main()
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