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July 8, 2017 21:28
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This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters. Learn more about bidirectional Unicode charactersOriginal file line number Diff line number Diff line change @@ -0,0 +1,40 @@ Start = Comment* fc:FunctionCall Comment* { return fc } // Function names must be at least 2 characters and must start with a lowercase letter FunctionName = first:[a-z] rest:[a-z0-9]i+ { return first + rest.join('') } FunctionCall = Ws name:FunctionName '(' Ws args:ArgumentList Ws ')' { return { type: 'FunctionCall', name, args } } / Ws name:FunctionName { return { type: 'FunctionCall', name, arguments: [] } } Argument = FunctionCall / Genotype / Base / Number ArgumentList = first:Argument rest:(Comment* Ws ',' Comment* Ws rlist:ArgumentList { return rlist })? (Ws ',')? { return rest === null ? [first] : [first].concat(rest); } Base = [AGCTD-] Genotype = allele1:Base ';' allele2:Base { return { type: 'Genotype', allele1, allele2 } } Number = n:[0-9]+ { return parseInt(n.join('')) } Ws = [ \t\r\n]* Comment = Ws '#' [^\r\n]* LineEnding? { return null } / '<!--' ( !'-->' . )* '-->' LineEnding = '\r\n' / '\r' / '\n' This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters. Learn more about bidirectional Unicode charactersOriginal file line number Diff line number Diff line change @@ -0,0 +1,23 @@ and( not(gs266), atleast(2, rs2032605(C), rs2032606(G), rs35460572(A), rs2032603(A), rs2032651(D;D), rs2032651(A), rs9341296(C), rs9341296(T), rs13304168(C), rs13304168(T), rs1118473(A), rs1118473(G), rs150173(A), rs150173(C), or(rs1558843(C;C),rs1558843(A;A)), rs16980426(G), rs16980426(T), or(rs17222419(C;C),rs17222419(T;T)), ) ) This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters. Learn more about bidirectional Unicode charactersOriginal file line number Diff line number Diff line change @@ -0,0 +1,9 @@ # [[rs1805007]](T;T), # [[rs1805008]](T;T)) # [[rs1805009]](C;C), or( rs1805007(T;T), rs1805008(T;T), rs1805009(C;C) )